Software

SICER:

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data by  Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao and Weiqun Peng. The software package for SICER is written in Python. The current version is SICER_V1.1.  It requires the standard python compiler, as well as the numpy and scipy package. The shell script in the package is run under linux/unix.  Instruction is in the README file included inside the package. The installation of scipy causes problem to some users. Instruction to installation of scipy is also included in the README. For updates and discussions, please join the google group for SICER .

Control libraries used in the manuscript: CD4 IgG, CD34 input, CD36 input

          

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