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| Publication
(Biological Physics) |
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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data,
Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and Weiqun Peng,
Bioinformatics, Advance Access published on June 8
(2009)
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De Novo
Design of a Monomeric Protein with beta-alpha-beta
Fold, Huanhuan Liang, Hao
Chen, Keqiang Fan, Ping Wei, Xianrong Guo,
Changwen Jin, Chen Zeng, Chao Tang, Luhua Lai, Angew Chem Int Ed Engl. 48(18):3301-3 (2009)
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| A
Logic-Based Technique that Charaterizes the Class of Boolean Networks
Producing a Given Biological Pathway, Guanyu Wang, Rahul Simha,
and Chen Zeng, submitted
(2008) |
| A
Novel Binding Pocket of Cyclin-Dependent
Kinase 2,
Hao Chen, Rachel Va Duyne,
Naigong Zhang, Fatah Kashanchi, and Chen Zeng,, Proteins:
Structure, Function and Bioinformatics 74:122-132 (2008) |
| Effect
of Transcription Peptide Inhibitors on HIV-1 Replication, Rachel
Van Duye, Jessica Cardenas, Weilin Wu, Kylene Kehn-Hall, Zak Klase,
Susana
Mendez, Chen Zeng, Hao Chen, Mohammed Saifuddin, and Fatah Kashanchi, Virology
376(2):308-22
(2008) |
| Reference
Energy Extremal
Optimization as a
Stochastic Search Algorithm Applied to Computational Protein Design,
Naigong Zhang
and Chen Zeng, Journal
of Computational Chemistry,
29(11):1762-71 (2008) |
| An
Improved Pairwise Decomposable Finite
Difference Poisson-Boltzmann Method for Computational Protein Design,
C.L. Vizcarra, N.G. Zhang, S.A.
Marshall, N.S. Wingreen, C. Zeng, and S.L. Mayo, Journal of
Computational Chemistry 29
(7),
1153-1162 (2008) |
| Pathway
Switching Explains the
Sharp Response Characteristic of Hypoxia Response Network,
Yihai Yu, Guanyu Wang, Rahul Simha,
Weiqun Peng, Frank Turano, and Chen Zeng, PLoS
Computational Biology 3(8), 1657-1668 (2007) |
| Inhibition
of HIV-1 Virus Replication Using
Small Soluble Tat Peptides, E.Agbottah, N.G. Zhang, S.
Dadgar, A.
Pumfery, J.D.
Wade, C. Zeng, and F. Kashanchi, Virology
345(2), 373-389 (2006) |
| Fast
Accurate
Evaluation
of Protein Surface Exposure, N.G. Zhang, C.
Zeng, and N. Wingreen, Proteins: Structure, Function, and
Bioinformatics 57, 565 (2004) |
| Identifying
Proteins of
High Designability via Surface-Exposure
Patterns, E. Emberly, J. Miller, C. Zeng, N. Wingreen, C.
Tang, Proteins: Structure, Function and
Genetics
47, 295 (2002) |
| Emergence
of
highly-designable
protein-backbone
conformations in an off-lattice model, J. Miller, C. Zeng,
N.S.
Wingreen, C.
Tang, Proteins: Structure, Function and
Genetics 47, 506 (2002) |
| The
Designability of
Protein
Structure, R.
Helling, H. Li, R. Mullin, J. Miller, N. Wingreen, Chen Zeng,and
C.Tang, Journal
of Molecular Graphics and Modeling 19, 157 (2001) |
| Selected
Publication (Condensed Matter Physics) |
| Test
of Replica Theory:
Thermodynamics of
Two-dimensional Model with Quenched Disorder, S. Bogner, T.
Emig, A.
Taha, and
C. Zeng, Phys. Rev. B 69, 104420
(2004) |
| Thermodynamics
of Mesoscopic Vortex
Systems in
1+1 Dimensions, C. Zeng, P.L. Leath, and Terence Hwa, Phys.
Rev. Letts. 83,
4860 (1999) |
| Absence
of
Two-Dimensional Bragg Glass, C. Zeng, P.L. Leath, and D.S.
Fisher,
Phys. Rev. Letts.
82,
1935 (1999) |
| Statistical
Topography
of Glassy Interfaces, C.
Zeng, J. Kondev, D.
McNamara, and A.A. Middleton, Phys. Rev.
Letts. 80, 109 (1998) |
| An
Efficient Implementation of High-order
Coupled-Cluster Methods Applied
to Quantum Magnets, C. Zeng, D.J.J. Farnell, and R.F. Bishop, J.
Stat. Phys. 90, 327 (1998) |
| Zero-Temperature
Transitions of Antiferromagnetic
Ising Model of Spin-S
on a Triangular Lattice, C. Zeng and C. Henley, Phys.
Rev. B. 55, 14935
(1997) |
| Ground-State
Roughness of the Disordered Substrate
and Flux Lines in
two dimensions, C. Zeng, A.A. Middleton, and Y. Shapir, Phys.
Rev. Letts. 77,
3204 (1996) |
| Quantum
Dimer Calculations on Spin-1/2 Kagome
Antiferromagnets, C. Zeng
and V. Elser, Phys. Rev. B 51, 8313
(1995) |
| Spin-Peierls
and Spin-Liquid Phases of Kagome
Quantum Antiferromagnets,
B. Marston and C. Zeng, J. Appl. Phys.
62, 5962 (1991) |
| Numerical
Studies of Antiferromagnetism on a Kagome
Net, C. Zeng and V. Elser, Phys. Rev. B
42, 8436 (1990) |
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