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| Publication
(Biological Physics) |
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Process-Based Network Decomposition Reveals Backbone Motif Structure,
Guanyu Wang, Chenghang Du, Hao Chen, Rahul Simha, Yongwu Rong, Yi Xiao, and Chen Zeng,
Proceedings of the National Academy of Sciences, 107, 10478
(2010)
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Topology and dynamics of Boolean networks with strong inhibition,
Yongwu Rong, Chen Zeng, Christina Evans, Hao Chen, and Guanyu Wang
Journal Discrete and Continuous Dynamical Systems, Accepted for Publication
(2010)
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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data,
Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and Weiqun Peng,
Bioinformatics, Advance Access published on June 8
(2009)
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De Novo
Design of a Monomeric Protein with beta-alpha-beta
Fold, Huanhuan Liang, Hao
Chen, Keqiang Fan, Ping Wei, Xianrong Guo,
Changwen Jin, Chen Zeng, Chao Tang, Luhua Lai, Angew Chem Int Ed Engl. 48(18):3301-3 (2009)
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| A
Novel Binding Pocket of Cyclin-Dependent
Kinase 2,
Hao Chen, Rachel Va Duyne,
Naigong Zhang, Fatah Kashanchi, and Chen Zeng,, Proteins:
Structure, Function and Bioinformatics 74:122-132 (2008) |
| Effect
of Transcription Peptide Inhibitors on HIV-1 Replication, Rachel
Van Duye, Jessica Cardenas, Weilin Wu, Kylene Kehn-Hall, Zak Klase,
Susana
Mendez, Chen Zeng, Hao Chen, Mohammed Saifuddin, and Fatah Kashanchi, Virology
376(2):308-22
(2008) |
| Reference
Energy Extremal
Optimization as a
Stochastic Search Algorithm Applied to Computational Protein Design,
Naigong Zhang
and Chen Zeng, Journal
of Computational Chemistry,
29(11):1762-71 (2008) |
| An
Improved Pairwise Decomposable Finite
Difference Poisson-Boltzmann Method for Computational Protein Design,
C.L. Vizcarra, N.G. Zhang, S.A.
Marshall, N.S. Wingreen, C. Zeng, and S.L. Mayo, Journal of
Computational Chemistry 29
(7),
1153-1162 (2008) |
| Pathway
Switching Explains the
Sharp Response Characteristic of Hypoxia Response Network,
Yihai Yu, Guanyu Wang, Rahul Simha,
Weiqun Peng, Frank Turano, and Chen Zeng, PLoS
Computational Biology 3(8), 1657-1668 (2007) |
| Inhibition
of HIV-1 Virus Replication Using
Small Soluble Tat Peptides, E.Agbottah, N.G. Zhang, S.
Dadgar, A.
Pumfery, J.D.
Wade, C. Zeng, and F. Kashanchi, Virology
345(2), 373-389 (2006) |
| Fast
Accurate
Evaluation
of Protein Surface Exposure, N.G. Zhang, C.
Zeng, and N. Wingreen, Proteins: Structure, Function, and
Bioinformatics 57, 565 (2004) |
| Identifying
Proteins of
High Designability via Surface-Exposure
Patterns, E. Emberly, J. Miller, C. Zeng, N. Wingreen, C.
Tang, Proteins: Structure, Function and
Genetics
47, 295 (2002) |
| Emergence
of
highly-designable
protein-backbone
conformations in an off-lattice model, J. Miller, C. Zeng,
N.S.
Wingreen, C.
Tang, Proteins: Structure, Function and
Genetics 47, 506 (2002) |
| The
Designability of
Protein
Structure, R.
Helling, H. Li, R. Mullin, J. Miller, N. Wingreen, Chen Zeng,and
C.Tang, Journal
of Molecular Graphics and Modeling 19, 157 (2001) |
| Selected
Publication (Condensed Matter Physics) |
| Test
of Replica Theory:
Thermodynamics of
Two-dimensional Model with Quenched Disorder, S. Bogner, T.
Emig, A.
Taha, and
C. Zeng, Phys. Rev. B 69, 104420
(2004) |
| Thermodynamics
of Mesoscopic Vortex
Systems in
1+1 Dimensions, C. Zeng, P.L. Leath, and Terence Hwa, Phys.
Rev. Letts. 83,
4860 (1999) |
| Absence
of
Two-Dimensional Bragg Glass, C. Zeng, P.L. Leath, and D.S.
Fisher,
Phys. Rev. Letts.
82,
1935 (1999) |
| Statistical
Topography
of Glassy Interfaces, C.
Zeng, J. Kondev, D.
McNamara, and A.A. Middleton, Phys. Rev.
Letts. 80, 109 (1998) |
| An
Efficient Implementation of High-order
Coupled-Cluster Methods Applied
to Quantum Magnets, C. Zeng, D.J.J. Farnell, and R.F. Bishop, J.
Stat. Phys. 90, 327 (1998) |
| Zero-Temperature
Transitions of Antiferromagnetic
Ising Model of Spin-S
on a Triangular Lattice, C. Zeng and C. Henley, Phys.
Rev. B. 55, 14935
(1997) |
| Ground-State
Roughness of the Disordered Substrate
and Flux Lines in
two dimensions, C. Zeng, A.A. Middleton, and Y. Shapir, Phys.
Rev. Letts. 77,
3204 (1996) |
| Quantum
Dimer Calculations on Spin-1/2 Kagome
Antiferromagnets, C. Zeng
and V. Elser, Phys. Rev. B 51, 8313
(1995) |
| Spin-Peierls
and Spin-Liquid Phases of Kagome
Quantum Antiferromagnets,
B. Marston and C. Zeng, J. Appl. Phys.
62, 5962 (1991) |
| Numerical
Studies of Antiferromagnetism on a Kagome
Net, C. Zeng and V. Elser, Phys. Rev. B
42, 8436 (1990) |
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